• Clemente KKJE, Thomsen MS. (2025) Co-occurring foundation species increase habitat heterogeneity across estuarine intertidal environments on the South Island of New Zealand. Marine Environmental Research 208: 107150 https://doi.org/10.1016/j.marenvres.2025.107150 
  • Clemente KJE, Thomsen MS (2024) Facilitation cascades across space: Monitoring estuarine foundation species from satellites to the microscope. Ecosphere15(4) https://doi.org/10.1002/ecs2.4834 
  • Clemente KJE, Thomsen MS. (2025) Ranking ecological contingencies from high-order factorial data demonstrate tidy control of biodiversity from facilitation cascades in estuaries on the South Island of New Zealand. Ecography https://doi.org/10.1111/ecog.07488 
  • Feehan CJ, Filbee-Dexter K, Thomsen MS, Wernberg T, Miles T. (2024) Ecosystem damage by increasing tropical cyclones. Communications Earth & Environment 5, 674 (2024) https://doi.org/10.1038/s43247-024-01853-2 
  • McCarthy GJ, Jowett TWD, Wing SR. (2024) Shifts in species composition in kelp forest communities: implications of differences in total phenolic composition among species. Marine Ecology Progress Series 744:17-31 https://doi.org/10.3354/meps14662 
  • Montie S, Thomsen MS. (2023). Facilitation of animals is stronger during summer marine heatwaves and around morphologically complex foundation species. Ecology and Evolution, 13(9), Article e10512. https://doi.org/10.1002/ece3.10512  
  • Montie S, Schiel DR, Thomsen MS. (2024) Shifts in foundation species dominance and altered interaction networks after compounding seismic uplift and extreme marine heatwaves. Marine Environmental Research 202 https://doi.org/10.1016/j.marenvres.2024.106738 
  • Montie S, Thoral F, Smith RO, Cook F, Tait LW, Pinkerton MH, Schiel DR, Thomsen MS (2024) Seasonal trends in marine heatwaves highlight vulnerable coastal ecoregions and historic change points in New Zealand. New Zealand Journal of Marine and Freshwater Research 58(2):274-299 https://doi.org/10.1080/00288330.2023.2218102 
  • Orchard S, Thoral F, Pinkerton M, Battershill CN, Ohia R, Schiel DR. (2025) River Radii: A comparative national framework for remote monitoring of environmental change at river mouths. Remote Sensing 17(8): 1369 https://doi.org/10.3390/rs17081369 
  • Orchard S, Fitzpatrick BM, Shah MAR, Andrade A. (2025) Impact assessment frameworks for nature-based climate solutions: A review of contemporary approaches. Sustainability 17(2): 677 https://doi.org/10.3390/su17020677 
  • Piñeiro-Corbeira C, Zimmerhackel J, Barreiro R, Bennett S, Burton M, Eger AM, Franco JN, Lavoie C, Rogers-Bennett L, Starko S, Thomsen M, Filbee-Dexter K, Norderhaug KM, Wernberg T. (2025). The Habitat Dependency Index: A new tool for quantifying species-habitat relationships. Ecological Indicators, 175, Article 113612. https://doi.org/10.1016/j.ecolind.2025.113612   
  • Smith KE, Aubin M, Burrows MT, Filbee-Dexter K, Hobday AJ, Holbrook NJ, King NG, Moore PJ, Sen Gupta A, Thomsen MS, Wernberg T, Edward Wilson E, Smale DA. (2024) Global impacts of marine heatwaves on coastal foundation species. Nature Communications15: 5052 https://doi.org/10.1038/s41467-024-49307-9 
  • Smith KE, Sen Gupta A, Burrows MT, Filbee-Dexter K, Hobday AJ, Holbrook NJ, Malan N, Moore PJ, Oliver ECJ, Thomsen MS, Wernberg T, Zhao Z, Smale DA. (2025) Ocean extremes as a stress test for marine ecosystems and society. Nature Climate Change 15: 231–235 https://doi.org/10.1038/s41558-025-02269-2 
  • Smith K, Sen Gupta A, Amaya D, Benthuysen J, Burrows M, Capotondi A, Filbee-Dexter K, Frölicher T, Hobday A, Holbrook N, Malan N, Moore P, Oliver E, Richaud B, Salcedo-Castro J, Smale D, Thomsen MS, Wernberg T. (2025). Baseline matters: Challenges and implications of different marine heatwave baselines. Progress in Oceanography 231: 103404 https://doi.org/10.1016/j.pocean.2024.103404 
  • Wernberg T, Thomsen MS, Baum JK, Bishop MJ, Bruno JF, Coleman MA, Filbee-Dexter K, Gagnon K, He Q, Murdiyarso D, Rogers K, Silliman BR, Sm https://doi.org/10.1146/annurev-marine-032122-121437 ale DA, Starko S, Vanderklift MA. (2024). Impacts of climate change on marine foundation species. Annual Review of Marine Science, 16: 247-282. https://doi.org/10.1146/annurev-marine-042023-093037